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CKSauthorer: Semi-automated Authoring of Essential Clinical FAQs

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Authors: 

Siddhartha Jonnalagadda
Majid Rastegar
Dingcheng Li
Soheil Moosavinasab
Hongfang Liu

Associated institutions: 

Mayo Clinic
Northwestern University Biomedical Informatics Center (NUBIC)

Resource URLs: 

https://sourceforge.net/projects/cksauthorer

Description: 

Work in progress of Dr. Jonnalagadda's K99/R00 project at Mayo Clinic and Northwestern University:The use of clinical knowledge systems such as UpToDate that provide reliable information at the point of care has been shown to improve patient safety and decision-making. However, because of the overabundance of clinical resources and guidelines, adding new content to UpToDate and ensuring that it is consistent with evidence is time consuming. This career grant proposes to investigate the feasibility of using a novel text mining based informatics approach to semi-automate the management of a clinical knowledge system, using UpToDate as the test bed. Although the methods will be applicable to any clinical knowledge system and any topic, they will be evaluated using two important test topics from cardiology – congestive heart failure and atrial fibrillation. While the existing content of UpToDate is private, the methods and the code we develop to assist in generating the content are being released incrementally.This project was also funded partly by Mayo Clinic's internal resources.

Application domains: 

Clinical

Type of resource: 

Software
Funding agency
Software

Software subtype: 

NLP / information extraction
Document/information retrieval
Data mining / Machine learning
Text mining

Programming languages: 

Java

Operating systems: 

Windows
Mac OS X
Linux
Unix

Included components: 

Application Programming Interface

Intended user type: 

Software developer
NLP researcher or developer

Available documentation: 

API

License type: 

Open source

Development milestones: 

Released the initial version on August 23, 2013. Expect more at the end of September to mark the transition of this project to Northwestern University from Mayo Clinic

Date of latest version: 

August 23, 2013

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